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Implementation of Biological Databases

SIDB - Scientific Image Data Base (SIDB)
A web-driven open source database for 2-D and 3-D images specifically designed for (confocal) microscopy units, but applicable wherever groups of users collaborate with images.

OpenHealth™ -- Open source software in health care
Electronic medical records and networks are the solutions to the technical issues around coordinating the work of diverse health care professionals caring for a single person across multiple sites. Open source software has potential to overcome some of the obstacles now being encountered in this transition: 1) Open source reference implementations of medical record standards could speed their adoption and increase interoperability in practice. The differences in adoption between TCP/IP and ISO network protocols illustrate the importance of reference implementations. 2) Open source software could reduce the issue of "Who pays?" in community health networks by eliminating per user and per site license costs and unbundling implementation and support charges.

ASN.1 - Abstract Syntax Notation One
ASN.1, or Abstract Syntax Notation One, is an International Standards Organization (ISO) data representation format used to achieve interoperability between platforms. The National Center for Biotechnology Information (NCBI) uses ASN.1 for the storage and retrieval of data such as nucleotide and protein sequences, structures, genomes, and MEDLINE records. It permits computers and software systems of all types to reliably exchange both the data structure and content. The NCBI Software Development ToolKit (known as the 'NCBI Toolbox') is a set of software and data exchange specifications used by NCBI to produce portable, modular software for molecular biology. The software in the Toolbox is primarily designed to read ASN.1 format records. It is freely available to the public, and can be used in its own right or as a foundation for building tools with similar properties.

VISIM: Information Retrieval and Exploration in Large Medical Image Collections
Visual information systems in medicine (VISIM) are emerging capable of retrieving items from large collections of images and exploring connections between them to discover new insights, confirm hypotheses, or search for similar findings. The advance of these systems is at the crossroads of computer vision, man-machine interaction and image database technology, invoking many novel issues that need to be addressed. This one day workshop was held in Utrecht, NL on October 18, 2001.

Digital Library Technologies (DLT)
The Digital Library Technologies group at the National Center for Supercomputer Applications (NCSA) is a continuing effort to develop components of a new infrastructure for building large-scale digital libraries of distributed, heterogeneous digital information objects. Components enable digital information to be used across and within communities by providing user-configurable tools for formatting, translating, publishing, indexing, and searching data and metadata. Tools are designed to interoperate using standard protocols such as the Open Archives Initiative Protocol for Metadata Harvesting and the ISO-standard Z39.50 protocol for information retrieval. The DLT group is also working with the challenges of community development of data standards and data use practices.

PEIPA - the Pilot European Image Processing Archive
PEIPA is an archive of material relating to the processing of images, with an emphasis on image analysis and computer vision. The archive is supported from the British Machine Vision Association, the University of Essex, and the EU-funded project Performance Characterization in Computer Vision.

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